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Names in reference:
- Acanthocerataceae
- Acanthophora muscoides var. ramosissima Sond.
- Achnanthaceae
- Achnanthales
- Achnanthes baccata (Leud.-Fortm.) Cleve
- Achnanthes mammalis (Castrac.) Cleve
- Achnanthidiaceae
- Acrochaetiaceae
- Acrochaetiales
- Acrochaetium spongicolum
- Acrochaetium spongicolum
- Acrochaetium trifilum (Buffham) Batters
- Acrochaetium virgatulum (Harv.) Thur.
- Actinella sp. 1 sensu Vyverman et al 1995
- Actinella sp. 2 sensu Vyverman et al 1995
- Actinella sp. 3 sensu Vyverman et al 1995
- Actinochloridaceae
- Actinotaenium sp.
- Alexandrium pseudogoniaulax (Biecheler) T.Horig. ex Yuki & Fukuyo
- Amphidinium aculeatum Daday
- Amphidinium lanceolatum Schröd.
- Amphidinium lohammari Skuja
- Amphipleuraceae
- Amphiroa stelligera (Lam.) Decne.
- Amphisolenia brevicauda Kof.
- Amphora graeffii
- Amphora maletractata Simonsen
- Anabaena sp.
- Anabaena sp. 1 sensu Borrelli 1984
- Anabaena sp. 1 sensu Sullivan et al 1988
- Anabaena sp. 3 sensu Sullivan et al 1988
- Anabaena sp. aff. inaequalis
- Anacystis montana (Lightf.) F.E.Drouet & W.A.Daily var. montana
- Anacystis thermalis (Menegh.) F.E.Drouet & W.A.Daily f. thermalis
- Anadyomenaceae
- Anaulaceae
- Anaulales
- Anomoeoneidaceae
- Anomoeoneis serians (Bréb. ex Kütz.) Cleve var. serians
- Anomoeoneis sphaerophora Pfitzer f. sphaerophora
- Aphageophyceae
- Aphanizomenonaceae
- Aphanochaetaceae
- Aphanothecaceae
- Aphanothece saxicola Nägeli var. saxicola
- Archaeperidinium excentricum (Paulsen) M.Lebour
- Archaeperidinium thorianum (Paulsen) M.Lebour
- Arthrocardia flabellata (Kütz.) Manza
- Arthrodesmus arcuatus Joshua var. arcuatus
- Arthrodesmus incus Hassall ex Ralfs var. incus
- Arthrodesmus phimus W.B.Turner var. phimus
- Arthrodesmus subulatus Kütz. var. subulatus
- Arthrodesmus triangularis Lagerh. var. triangularis
- Astasiaceae
- Astasiales
- Attheyaceae
- Audouinella leprieurii (Mont.) G.Martens
- Audouinella leprieurii var. hookeri E.Post
- Audouinella sp.
- Audouinella sp. aff. scopulata
- Aulacoseiraceae
- Aulacoseira distans var. nivalis
- Aulacoseirales
- Aulacoseira sp. 1 sensu Vyverman et al 1995
- Bacillariaceae
- Bacillariales
- Bacillariophyceae
- Bacillariophyceae classis incertae sedis
- Bacillariophyceae familia incertae sedis
- Bacillariophyceae ordo incertae sedis
- Bacillariophyta
- Balbianiaceae
- Balbianiales
- Bambusina brebissonii Kütz. f. brebissonii
- Bambusina brebissonii Kütz. var. brebissonii
- Bangia ciliaris Carmich.
- Batrachospermaceae
- Batrachospermales
- Batrachospermum aff. campyloclonum
- Batrachospermum aff. wattsii
- Batrachospermum boryanum sensu Entwisle 1989b
- Batrachospermum ectocarpum sensu Entwisle & Kraft 1984
- Batrachospermum sp. aff. cayennense A
- Batrachospermum sp. aff. cayennense B
- Bellerochea malleus (Brightw.) Van Heurck
- Berkeleyaceae
- Bicosoecaceae
- Bicosoecales
- Bicosoecophyceae
- Biddulphiaceae
- Biddulphiales
- Bigyra
- Bindera levringii Lindauer
- Bindera levringii Lindauer
- Biremis coltranei
- Biremis coltranei
- Biremis coltranei var. triundulata
- Biremis coltranei var. triundulata
- Biremis milesii
- Biremis milesii
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